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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17837308_17852068_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17837308 - 17852068
Intron Length:
14761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
ACTCTCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
ATGCCCCCATTT
Flanking Amino Acid:
DAKSLVAALKNLSSAKRKFA
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.5
39.8
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
70.3
0.46
1
65.8
35.3
Minor 5ss
28.8
-2.4
3
29.1
36.7
Minor BPS
43.2
-0.4
2
61.12
42.6

Associated Gene:

Gene:
ARHGAP26
Ensembl Gene ID:
ENSAPLG00000006831
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023136
17837009 - 17955482
118474