About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17852165_17852829_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17852165 - 17852829
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
ACGTGCTGAACC
Flanking Amino Acid:
DAETDDEICIAKSLQEFATV
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
76.9
0.61
0.9
69.9
36.5
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
51.7
0.03
1.9
61.4
43.9

Associated Gene:

Gene:
ARHGAP26
Ensembl Gene ID:
ENSAPLG00000006831
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030321
17849694 - 17955482
105789
ENSAPLT00000023136
17837009 - 17955482
118474
ENSAPLT00000046468
17850857 - 17955482
104626
ENSAPLT00000007163
17849694 - 17958385
108692
ENSAPLT00000045491
17850857 - 17955482
104626
ENSAPLT00000031486
17849694 - 17955482
105789