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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17853289_17854662_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17853289 - 17854662
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCAGCAT
U12 Branch Point Sequence:
GGGCGCAGCATT
Flanking Amino Acid:
FRKEQIGAAKDAKKKYDKET
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
43.3
-0.4
1.5
47.7
45.7
Major PPT
80.7
0.69
0.8
76.2
32.4
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
33.5
-1.2
2.1
44.85
39.6

Associated Gene:

Gene:
ARHGAP26
Ensembl Gene ID:
ENSAPLG00000006831
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030321
17849694 - 17955482
105789
ENSAPLT00000023136
17837009 - 17955482
118474
ENSAPLT00000046468
17850857 - 17955482
104626
ENSAPLT00000007163
17849694 - 17958385
108692
ENSAPLT00000045491
17850857 - 17955482
104626
ENSAPLT00000031486
17849694 - 17955482
105789