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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17854765_17856459_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17854765 - 17856459
Intron Length:
1695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CCGGTGCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCCTCTTTCACC
Flanking Amino Acid:
SKKKESQLQEADSQVDLVRQ
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
77.7
0.69
1
81
30.2
Major PPT
64.4
0.33
1
56.9
38.7
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
62.4
0.37
1.8
69.26
43

Associated Gene:

Gene:
ARHGAP26
Ensembl Gene ID:
ENSAPLG00000006831
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031486
17849694 - 17955482
105789
ENSAPLT00000030321
17849694 - 17955482
105789
ENSAPLT00000023136
17837009 - 17955482
118474
ENSAPLT00000046468
17850857 - 17955482
104626
ENSAPLT00000007163
17849694 - 17958385
108692
ENSAPLT00000045491
17850857 - 17955482
104626