About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17860763_17867794_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17860763 - 17867794
Intron Length:
7032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TGCAGTTTACTC
Flanking Amino Acid:
RFCFDVEAVDRPGVITMQAL
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
85.2
0.79
0.7
81
24.1
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
44
-0.4
1.9
50.8
40.9

Associated Gene:

Gene:
ARHGAP26
Ensembl Gene ID:
ENSAPLG00000006831
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023136
17837009 - 17955482
118474
ENSAPLT00000046468
17850857 - 17955482
104626
ENSAPLT00000007163
17849694 - 17958385
108692
ENSAPLT00000045491
17850857 - 17955482
104626
ENSAPLT00000031486
17849694 - 17955482
105789
ENSAPLT00000030321
17849694 - 17955482
105789