About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17867874_17884086_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17867874 - 17884086
Intron Length:
16213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GTCTTCATAAGG
Flanking Amino Acid:
WMEAMDGREPVYNSNKDNQS
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
68
38.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
34.7
-1.7
2.8
41.9
44.5
Minor BPS
48.5
-0.2
2
56.33
45

Associated Gene:

Gene:
ARHGAP26
Ensembl Gene ID:
ENSAPLG00000006831
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007163
17849694 - 17958385
108692
ENSAPLT00000045491
17850857 - 17955482
104626
ENSAPLT00000031486
17849694 - 17955482
105789
ENSAPLT00000030321
17849694 - 17955482
105789
ENSAPLT00000023136
17837009 - 17955482
118474
ENSAPLT00000046468
17850857 - 17955482
104626