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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17884124_17890086_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17884124 - 17890086
Intron Length:
5963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCTTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAT
U12 Branch Point Sequence:
AGTTGATCACTT
Flanking Amino Acid:
NSNKDNQSEGTAQLDNIGFS
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
72.4
0.56
1.1
63.1
44.4
Major PPT
85.7
0.8
0.7
77.3
31.5
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
41
-0.6
2.2
60.56
43.1

Associated Gene:

Gene:
ARHGAP26
Ensembl Gene ID:
ENSAPLG00000006831
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030321
17849694 - 17955482
105789
ENSAPLT00000023136
17837009 - 17955482
118474
ENSAPLT00000046468
17850857 - 17955482
104626
ENSAPLT00000007163
17849694 - 17958385
108692
ENSAPLT00000045491
17850857 - 17955482
104626
ENSAPLT00000031486
17849694 - 17955482
105789