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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17899976_17900970_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17899976 - 17900970
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TCATCTTCTATT
Flanking Amino Acid:
QFQRSFIKAAKLENQESRVS
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.7
33.3
Major BPS
71.6
0.54
1
72
33.1
Major PPT
74.1
0.54
1
68
37.1
Minor 5ss
40.1
-1.1
2.9
49.5
41.1
Minor BPS
49.7
0.06
1.8
68.4
43.2

Associated Gene:

Gene:
ARHGAP26
Ensembl Gene ID:
ENSAPLG00000006831
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023136
17837009 - 17955482
118474
ENSAPLT00000046468
17850857 - 17955482
104626
ENSAPLT00000007163
17849694 - 17958385
108692
ENSAPLT00000045491
17850857 - 17955482
104626
ENSAPLT00000031486
17849694 - 17955482
105789
ENSAPLT00000030321
17849694 - 17955482
105789