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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17932093_17955241_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17932093 - 17955241
Intron Length:
23149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGTCAGTAAAT
Flanking Amino Acid:
EVIKPNRPNSLSPLRKARAL
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
68.7
42
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
39
-1.2
2.7
53.9
42.7
Minor BPS
48.4
-0
2.3
73.01
43.4

Associated Gene:

Gene:
ARHGAP26
Ensembl Gene ID:
ENSAPLG00000006831
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030321
17849694 - 17955482
105789