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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17973539_17974453_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17973539 - 17974453
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTATCACTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTTGCTTTATCA
Flanking Amino Acid:
LTKLLDSMHDVVENLLSFCF
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
78.3
0.7
1
80
32.1
Major PPT
72.1
0.5
0.8
67
34
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
67.1
0.53
1.7
78.76
38.3

Associated Gene:

Gene:
NR3C1
Ensembl Gene ID:
ENSAPLG00000007318
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038971
17973128 - 18033949
60822
ENSAPLT00000007621
17973128 - 18117423
144296