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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17984166_17986755_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17984166 - 17986755
Intron Length:
2590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CACACCTCAACT
Flanking Amino Acid:
AAVKWAKAIPGFRNLHLDDQ
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
58.9
0.36
1.7
70.34
46

Associated Gene:

Gene:
NR3C1
Ensembl Gene ID:
ENSAPLG00000007318
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007621
17973128 - 18117423
144296
ENSAPLT00000038971
17973128 - 18033949
60822