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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18032565_18033583_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18032565 - 18033583
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CTAACTTTGAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.8
0.78
0.7
80.4
31.3
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
56
0.27
1.5
69.5
41.4

Associated Gene:

Gene:
NR3C1
Ensembl Gene ID:
ENSAPLG00000007318
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038971
17973128 - 18033949
60822