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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18032565_18117297_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18032565 - 18117297
Intron Length:
84733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CTAACTTTGAAT
Flanking Amino Acid:
TILHPGLAPQLMLKVMDSKE
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.8
0.78
0.7
80.4
31.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
56
0.27
1.5
69.5
41.4

Associated Gene:

Gene:
NR3C1
Ensembl Gene ID:
ENSAPLG00000007318
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007621
17973128 - 18117423
144296