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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18147238_18148022_R

Intron Information:

Intron Rank:
135802
Intron Class:
major
Intron Phase:
Intron Coordinates:
18147238 - 18148022
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGAAAC
5'SS Class:
major
3'SS Sequence:
TAATTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCCTCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.8
37.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.6
0.73
0.8
81.6
35.5
Minor 5ss
32.5
-2
3.2
39.7
40.4
Minor BPS
77.5
0.94
1.1
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020457
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025365
18140542 - 18148122
7581