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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18192731_18193340_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18192731 - 18193340
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTATCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATCTTCACA
Flanking Amino Acid:
LSTFAIVFSLQGVMGIILTA
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.1
0.79
0.8
80.1
31.9
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
66.3
0.51
1.8
79.58
36.6

Associated Gene:

Gene:
YIPF5
Ensembl Gene ID:
ENSAPLG00000007623
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007918
18192568 - 18200635
8068