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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18194699_18195947_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18194699 - 18195947
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATTT
5'SS Class:
major
3'SS Sequence:
ATGTAACTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCATGTAACT
Flanking Amino Acid:
NFEDEPPLLEELGINFDHIW
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
76.6
32.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
71.5
0.48
1
63.5
42.2
Minor 5ss
49.3
-0
2.9
73.4
43.4
Minor BPS
55.4
0.25
2.2
82.33
38.9

Associated Gene:

Gene:
YIPF5
Ensembl Gene ID:
ENSAPLG00000007623
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007918
18192568 - 18200635
8068