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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18295061_18301770_R

Intron Information:

Intron Rank:
150100
Intron Class:
major
Intron Phase:
Intron Coordinates:
18295061 - 18301770
Intron Length:
6710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCCAT
U12 Branch Point Sequence:
CTGTGCCCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
52.1
0.05
1.2
62.1
35.8
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
39
-0.8
2.3
50.74
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028326
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032104
18292378 - 18348114
55737