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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18399486_18402689_R

Intron Information:

Intron Rank:
131182
Intron Class:
major
Intron Phase:
Intron Coordinates:
18399486 - 18402689
Intron Length:
3204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTGGTACC
5'SS Class:
major
3'SS Sequence:
TTCCTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTCACGTGGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
63.6
40.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
82
0.72
0.8
76.5
32.1
Minor 5ss
32.1
-2
2.7
36.1
33.9
Minor BPS
48.2
-0
2.3
72.73
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017774
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027297
18397901 - 18402860
4960