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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18472034_18480393_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18472034 - 18480393
Intron Length:
8360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCTAAAACC
Flanking Amino Acid:
VFRESLENPNWRKCICVVSL
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.4
0.8
0.8
80.1
31.8
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
55.6
0.15
1.9
71.93
39.2

Associated Gene:

Gene:
PRELID2
Ensembl Gene ID:
ENSAPLG00000007685
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019536
18471697 - 18489830
18134