Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18478022_18480393_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18478022 - 18480393

Intron Length:

2372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TCCTGTTTCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAAACAA

U12 Branch Point Sequence:

GGAGAAACAAGT

Flanking Amino Acid:

VFRESLENPNWTDFTQKGRI

Intron Amino Acid Position:

212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

71.1

32.7

Major BPS

44.6

-0.3

1.1

47.3

36.1

Major PPT

76.1

0.59

0.8

72.1

32.5

Minor 5ss

28.6

-2.4

32.8

35.9

Minor BPS

31.4

-1.3

42.42

39.4

Associated Gene:

Gene:

PRELID2

Ensembl Gene ID:

ENSAPLG00000007685

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025353

18471697 - 18489830

18134

ENSAPLT00000007970

18471697 - 18489634

17938

ENSAPLT00000032732

18471697 - 18489830

18134