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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18482149_18484108_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18482149 - 18484108
Intron Length:
1960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTGGCTTTTACC
Flanking Amino Acid:
TAVETVEEKTDLSTGIVYRR
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
74.2
0.6
1
67
39.4
Major PPT
75.8
0.58
0.9
70.9
33.7
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
59.4
0.28
1.8
69.99
42.1

Associated Gene:

Gene:
PRELID2
Ensembl Gene ID:
ENSAPLG00000007685
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007970
18471697 - 18489634
17938