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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18491288_18492928_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18491288 - 18492928
Intron Length:
1641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TTTTTTGTGACC
Flanking Amino Acid:
KKVACNQYMQEGDAEHACSQ
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
66.3
0.41
1
61
37.5
Major PPT
85.3
0.79
0.8
80.2
31.8
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
58.7
0.25
2
76.51
34.1

Associated Gene:

Gene:
GRXCR2
Ensembl Gene ID:
ENSAPLG00000026893
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038831
18490108 - 18495505
5398