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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18535652_18536302_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18535652 - 18536302
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCGG
5'SS Class:
major
3'SS Sequence:
CTTCTCACTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCCCTTCTCACT
Flanking Amino Acid:
PDTSRNSTEKQVKTVRFQNH
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
55.4
48.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.3
0.68
0.8
74.3
29.2
Minor 5ss
29.1
-2.4
3.4
38.7
46.4
Minor BPS
44.2
-0.3
2
60.74
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018144
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034976
18532067 - 18536596
4530