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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18550953_18551928_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18550953 - 18551928
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
AACTCTCTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TTTGCCTTTACC
Flanking Amino Acid:
GKPFSVFRTEPGVSVFLVNP
Intron Amino Acid Position:
1012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
72.4
0.5
0.8
65.7
35.1
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
72.3
0.68
1.7
82.88
37.2

Associated Gene:

Gene:
LARS1
Ensembl Gene ID:
ENSAPLG00000008145
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008579
18550202 - 18579203
29002
ENSAPLT00000033733
18550202 - 18574192
23991
ENSAPLT00000017437
18550202 - 18576938
26737