Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18552025_18553168_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18552025 - 18553168

Intron Length:

1144

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

TCCTTTTTTACA

Flanking Amino Acid:

NIVYLTNSLELDHIEVKFAS

Intron Amino Acid Position:

980

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

1.1

36.1

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

90.9

0.92

0.6

86.5

24.5

Minor 5ss

35.7

-1.6

2.6

42.8

44.1

Minor BPS

58.1

0.25

1.6

65.81

41.1

Associated Gene:

Gene:

LARS1

Ensembl Gene ID:

ENSAPLG00000008145

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008579

18550202 - 18579203

29002

ENSAPLT00000033733

18550202 - 18574192

23991

ENSAPLT00000017437

18550202 - 18576938

26737