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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18553274_18554628_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18553274 - 18554628
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATCAATT
Flanking Amino Acid:
KVMPFVAMIKENLEKKGSRV
Intron Amino Acid Position:
945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.6
0.67
0.9
76.3
32.4
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
57.3
0.31
2
82.92
37.9

Associated Gene:

Gene:
LARS1
Ensembl Gene ID:
ENSAPLG00000008145
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008579
18550202 - 18579203
29002
ENSAPLT00000033733
18550202 - 18574192
23991
ENSAPLT00000017437
18550202 - 18576938
26737