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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18555964_18556067_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18555964 - 18556067
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGTGT
5'SS Class:
major
3'SS Sequence:
ATTGTTCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTTCCTATTG
Flanking Amino Acid:
KSFMAPVKGKKSTKESPQKP
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
68.9
38.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
73.1
0.52
0.8
71
35.3
Minor 5ss
32.4
-2
3.4
46.8
48.5
Minor BPS
53.2
-0
2
67.42
40.8

Associated Gene:

Gene:
LARS1
Ensembl Gene ID:
ENSAPLG00000008145
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017437
18550202 - 18576938
26737
ENSAPLT00000008579
18550202 - 18579203
29002
ENSAPLT00000033733
18550202 - 18574192
23991