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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18556209_18556808_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18556209 - 18556808
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAGTA
5'SS Class:
major
3'SS Sequence:
CCTTTCTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTCTTCAAAG
Flanking Amino Acid:
CEHIWSLLGKPDSIMKASWP
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68.2
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.6
0.51
1
73.7
28.8
Minor 5ss
33
-1.9
3.6
47.5
47.9
Minor BPS
58
0.11
1.8
64.71
43.2

Associated Gene:

Gene:
LARS1
Ensembl Gene ID:
ENSAPLG00000008145
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017437
18550202 - 18576938
26737
ENSAPLT00000008579
18550202 - 18579203
29002
ENSAPLT00000033733
18550202 - 18574192
23991