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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18557940_18558169_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18557940 - 18558169
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
CTTTCCTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATGATCT
Flanking Amino Acid:
ANTFNDRVFASEMNAGVMKT
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
76.9
0.61
0.7
69.9
31
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
45.7
-0.2
2.3
71.6
44.6

Associated Gene:

Gene:
LARS1
Ensembl Gene ID:
ENSAPLG00000008145
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033733
18550202 - 18574192
23991
ENSAPLT00000017437
18550202 - 18576938
26737
ENSAPLT00000008579
18550202 - 18579203
29002