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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18558354_18558878_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18558354 - 18558878
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
GTTAGCTGATGT
Flanking Amino Acid:
AQTVDKFSADGMRLALADAG
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
80.7
0.69
0.9
77.9
36.6
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
41.7
-0.5
2.3
62.37
47

Associated Gene:

Gene:
LARS1
Ensembl Gene ID:
ENSAPLG00000008145
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008579
18550202 - 18579203
29002
ENSAPLT00000033733
18550202 - 18574192
23991
ENSAPLT00000017437
18550202 - 18576938
26737