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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18570706_18571109_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18570706 - 18571109
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TAGTACTTACTA
Flanking Amino Acid:
RERNKIKFGKRYTIYSPKDG
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
73.1
43.9
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
81.9
0.72
0.7
80.7
30.6
Minor 5ss
38.3
-1.3
3
51.2
45.1
Minor BPS
54.8
0.15
1.8
65.35
41.3

Associated Gene:

Gene:
LARS1
Ensembl Gene ID:
ENSAPLG00000008145
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008579
18550202 - 18579203
29002
ENSAPLT00000033733
18550202 - 18574192
23991
ENSAPLT00000017437
18550202 - 18576938
26737