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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18571223_18571480_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18571223 - 18571480
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGTA
5'SS Class:
strong_major
3'SS Sequence:
TACACATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTACTTACTA
Flanking Amino Acid:
VQDLKSMGLKVDWRRSFITT
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.5
32.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.5
0.51
1
62.2
43
Minor 5ss
41.8
-0.9
3.2
58.1
46.5
Minor BPS
62.2
0.38
1.8
74.71
36.9

Associated Gene:

Gene:
LARS1
Ensembl Gene ID:
ENSAPLG00000008145
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033733
18550202 - 18574192
23991
ENSAPLT00000017437
18550202 - 18576938
26737
ENSAPLT00000008579
18550202 - 18579203
29002