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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18579239_18580384_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18579239 - 18580384
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCTTT
5'SS Class:
weak_major
3'SS Sequence:
GTCTCTTAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCATGCTTAATT
Flanking Amino Acid:
SQEKEVVKEENFQESVEEER
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
78.8
38.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
70
0.45
1
66.6
38.4
Minor 5ss
68.6
0.63
2.3
82.3
37.5
Minor BPS
68
0.64
1.8
80.42
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009716
18576634 - 18595762
19129