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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18580477_18581067_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18580477 - 18581067
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCTAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATAAATA
Flanking Amino Acid:
QRSRGDSSEQRTREKKRDDG
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.86
1.1
82.9
36.3
Major BPS
100
1.24
0.5
100
0
Major PPT
80.9
0.69
0.9
73.5
41.9
Minor 5ss
23.5
-3.1
3.5
34.7
41
Minor BPS
64.7
0.46
1.9
80.44
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009716
18576634 - 18595762
19129