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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18582313_18582860_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18582313 - 18582860
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACTGT
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCCTTTAAGA
Flanking Amino Acid:
PPKRRCRDYDERGFCVLGDL
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
64.8
41.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
45.1
-0.5
3
61.8
44.9
Minor BPS
71.2
0.66
1.6
80.59
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009716
18576634 - 18595762
19129