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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18588775_18589063_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18588775 - 18589063
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCGTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAACA
Flanking Amino Acid:
CPPLKKPWLGKQANNNQNKP
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
87.4
26.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.2
0.68
0.8
73.6
37
Minor 5ss
41.1
-1
3.2
58.9
39.4
Minor BPS
73.5
0.73
1.4
79.77
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009716
18576634 - 18595762
19129