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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18591689_18592172_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18591689 - 18592172
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTCTGC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTC
Flanking Amino Acid:
DVQEALKKKQEAMKLQQDMR
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.1
53.2
41
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
88.1
0.86
0.6
83.8
24.5
Minor 5ss
37.7
-1.4
3.2
50.8
45.8
Minor BPS
60.8
0.32
1.7
74.67
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009716
18576634 - 18595762
19129