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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18592248_18592352_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18592248 - 18592352
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTAATACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTTATTAATA
Flanking Amino Acid:
MLEKQIECQKMLISKLEKNK
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
64.9
0.34
1
59.2
40.6
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
67.3
0.54
1.6
75.76
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009716
18576634 - 18595762
19129