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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18593054_18593164_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18593054 - 18593164
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCGTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
RKKLNQLQVEAARLGILPVG
Intron Amino Acid Position:
888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
69.9
41.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
41.7
-0.9
3.4
55.8
43
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009716
18576634 - 18595762
19129