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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18593357_18594939_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18593357 - 18594939
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
AAACACAATGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCATTTTAAAC
Flanking Amino Acid:
EKDELLQHFSAANQGSRFKD
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
50.2
0.01
1
42
37.2
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
60.8
0.32
1.4
67.54
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009309
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009716
18576634 - 18595762
19129