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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18635552_18639434_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18635552 - 18639434
Intron Length:
3883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGG
5'SS Class:
strong_major
3'SS Sequence:
ATCCATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GCTTGCTTATCC
Flanking Amino Acid:
PLPGMPIPLPGVAMMQIVSC
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
72.1
40.4
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
79
0.65
0.9
72.2
37
Minor 5ss
38.9
-1.2
2.9
49.7
46.6
Minor BPS
54.5
0.12
2.1
66.76
44.8

Associated Gene:

Gene:
TCERG1
Ensembl Gene ID:
ENSAPLG00000009432
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022136
18628018 - 18661744
33727