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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18635552_18640792_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18635552 - 18640792
Intron Length:
5241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATAT
Flanking Amino Acid:
PLPGMPIPLPGVLPGMAPPI
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
72.1
40.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.5
0.62
0.9
73.2
36.4
Minor 5ss
38.9
-1.2
2.9
49.7
46.6
Minor BPS
65
0.55
1.7
82.03
39.2

Associated Gene:

Gene:
TCERG1
Ensembl Gene ID:
ENSAPLG00000009432
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009859
18628018 - 18660960
32943