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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18646890_18648643_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18646890 - 18648643
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTATATTTAATT
Flanking Amino Acid:
EDEPIKIKKRKKDDNKDIDS
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.8
0.8
0.8
77.7
40.7
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
67
0.61
1.4
78.65
37.4

Associated Gene:

Gene:
TCERG1
Ensembl Gene ID:
ENSAPLG00000009432
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022136
18628018 - 18661744
33727
ENSAPLT00000009859
18628018 - 18660960
32943