Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18668122_18668293_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18668122 - 18668293

Intron Length:

172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

CCCCTGCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCACAC

U12 Branch Point Sequence:

CCGGCCTCACAC

Flanking Amino Acid:

MENRPIETYQVHDYLRSKLC

Intron Amino Acid Position:

321

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

77.5

32.9

Major BPS

55.5

0.14

64.3

32.4

Major PPT

62.9

0.29

0.9

54.3

35.3

Minor 5ss

26.6

-2.7

30.5

43.3

Minor BPS

41.2

-0.6

1.9

42.95

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009636

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032056

18666019 - 18758766

92748

ENSAPLT00000010036

18666019 - 18728001

61983