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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18690957_18727931_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18690957 - 18727931
Intron Length:
36975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
AGTTACTTAAAT
Flanking Amino Acid:
FLRDHSYATEADIISTVEFN
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
68.3
0.65
1.6
82.23
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009636
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010036
18666019 - 18728001
61983