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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18758616_18758756_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18758616 - 18758756
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGCATCTTATCT
Flanking Amino Acid:
MIPGFENFMQDVL
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
76.8
0.6
1
73.2
37.1
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
58.3
0.34
1.7
72.94
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009636
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032056
18666019 - 18758766
92748