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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1876194_1876298_F

Intron Information:

Intron Rank:
130944
Intron Class:
major
Intron Phase:
Intron Coordinates:
1876194 - 1876298
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
TTCTAAATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTTCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
73.3
0.53
0.9
67.4
37.7
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
68.1
0.65
1.6
82.85
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020322
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038869
1874330 - 1882071
7742