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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18776168_18776262_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18776168 - 18776262
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGGGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTACTCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TATCACTTGATT
Flanking Amino Acid:
EKCIELGLFNVCVVQKNDTK
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.3
65.8
42.7
Major BPS
78.3
0.7
1
80
32.1
Major PPT
71.8
0.49
0.9
70.9
34.9
Minor 5ss
44.3
-0.6
3.4
62.6
42.8
Minor BPS
64
0.52
1.5
78.85
36.9

Associated Gene:

Gene:
STK32A
Ensembl Gene ID:
ENSAPLG00000009674
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032450
18775775 - 18802262
26488