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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18805653_18806190_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18805653 - 18806190
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCTCCTGTAACA
Flanking Amino Acid:
VYKRIKARRKMAEMHAVPRG
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
73.3
0.52
0.9
68.8
35.9
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
58.4
0.26
2
72.26
40.2

Associated Gene:

Gene:
DPYSL3
Ensembl Gene ID:
ENSAPLG00000010132
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033133
18805079 - 18838086
33008
ENSAPLT00000032944
18805079 - 18823209
18131
ENSAPLT00000022473
18804976 - 18838086
33111
ENSAPLT00000010677
18805079 - 18836620
31542