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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18810063_18810895_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18810063 - 18810895
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
CCCCCTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTACAC
U12 Branch Point Sequence:
GTCCCCTACACT
Flanking Amino Acid:
ADLISQARKKGNVVFGEPIT
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.1
43.4
Major BPS
49.2
-0
1.1
58.3
36.8
Major PPT
79.8
0.67
0.8
71.4
33
Minor 5ss
33.8
-1.8
2.8
34.8
41.4
Minor BPS
49.2
0.02
2.1
69.9
46.6

Associated Gene:

Gene:
DPYSL3
Ensembl Gene ID:
ENSAPLG00000010132
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032944
18805079 - 18823209
18131
ENSAPLT00000022473
18804976 - 18838086
33111
ENSAPLT00000010677
18805079 - 18836620
31542
ENSAPLT00000033133
18805079 - 18838086
33008